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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1697405_1698082_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
1697405 - 1698082
Intron Length:
678

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATAACAT
5'SS Class:
major
3'SS Sequence:
TATTTAAACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TGTATTTAAACT
Flanking Amino Acid:
ENVEVITRPKDMDPRLIAWK
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
66.7
38.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
66.5
0.37
1
64.8
40.3
Minor 5ss
39.1
-1.2
3.2
56
48.1
Minor BPS
59
0.36
1.7
76.69
40.1

Associated Gene:

Gene:
ACTR8
Ensembl Gene ID:
ENSAPLG00000012977
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013527
1689929 - 1699226
9298