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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17034004_17041521_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17034004 - 17041521
Intron Length:
7518

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTTTTTCTATTT
Flanking Amino Acid:
QKPLEECEDDELPAGWEKIE
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
71.3
32.5
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
89
0.88
0.7
81.4
35.2
Minor 5ss
30.9
-2.2
3.4
38.5
41.1
Minor BPS
49.1
0.01
1.9
71.32
40.7

Associated Gene:

Gene:
MAGI1
Ensembl Gene ID:
ENSAPLG00000015151
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025942
16784897 - 17103079
318183