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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17041580_17043520_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17041580 - 17043520
Intron Length:
1941

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGCT
5'SS Class:
major
3'SS Sequence:
CTTTCTTCCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTAAT
U12 Branch Point Sequence:
GATTTCCTAATT
Flanking Amino Acid:
EDPVYGVYYVDHINRKTQYE
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
72.5
37.3
Major BPS
81.9
0.79
0.9
80.1
30
Major PPT
83.8
0.76
0.7
76.8
31.9
Minor 5ss
36.6
-1.5
3.3
47.2
42.3
Minor BPS
63.6
0.5
1.6
78.52
37.5

Associated Gene:

Gene:
MAGI1
Ensembl Gene ID:
ENSAPLG00000015151
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020095
16784897 - 17103079
318183
ENSAPLT00000047968
16784897 - 17103079
318183
ENSAPLT00000015821
16825669 - 17102662
276994
ENSAPLT00000041725
16784897 - 17103079
318183
ENSAPLT00000027158
16784897 - 17103079
318183
ENSAPLT00000025942
16784897 - 17103079
318183