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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17043610_17044670_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17043610 - 17044670
Intron Length:
1061

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGCACC
5'SS Class:
major
3'SS Sequence:
CTGCCCCCTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
AAACAAGTAACA
Flanking Amino Acid:
QLEQQQQPPEEWTEECPSLP
Intron Amino Acid Position:
348

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
61.8
43
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
72.3
0.5
0.8
62.2
34.7
Minor 5ss
35.6
-1.6
2.9
44.5
43.1
Minor BPS
41.5
-0.6
2.2
52.32
38.3

Associated Gene:

Gene:
MAGI1
Ensembl Gene ID:
ENSAPLG00000015151
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025942
16784897 - 17103079
318183
ENSAPLT00000020095
16784897 - 17103079
318183
ENSAPLT00000015821
16825669 - 17102662
276994
ENSAPLT00000047968
16784897 - 17103079
318183
ENSAPLT00000027158
16784897 - 17103079
318183