About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17043610_17047974_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17043610 - 17047974
Intron Length:
4365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGCACC
5'SS Class:
major
3'SS Sequence:
ACTTCCTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATTTTCCAAACT
Flanking Amino Acid:
QLEQQQQPPEGKPFFTRNPS
Intron Amino Acid Position:
404

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.2
61.8
43
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
71.4
0.48
0.9
65.4
34.6
Minor 5ss
35.6
-1.6
2.9
44.5
43.1
Minor BPS
58.8
0.35
2
82.68
38.5

Associated Gene:

Gene:
MAGI1
Ensembl Gene ID:
ENSAPLG00000015151
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041725
16784897 - 17103079
318183