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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17044764_17047974_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17044764 - 17047974
Intron Length:
3211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAACC
5'SS Class:
major
3'SS Sequence:
ACTTCCTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATTTTCCAAACT
Flanking Amino Acid:
QEAVREAPVQGKPFFTRNPS
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1.1
72.5
37.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
71.4
0.48
0.9
65.4
34.6
Minor 5ss
40.3
-1.1
2.9
53.5
43.3
Minor BPS
58.8
0.35
2
82.68
38.5

Associated Gene:

Gene:
MAGI1
Ensembl Gene ID:
ENSAPLG00000015151
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027158
16784897 - 17103079
318183
ENSAPLT00000025942
16784897 - 17103079
318183
ENSAPLT00000020095
16784897 - 17103079
318183
ENSAPLT00000015821
16825669 - 17102662
276994
ENSAPLT00000047968
16784897 - 17103079
318183