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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17048158_17048959_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17048158 - 17048959
Intron Length:
802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTAA
5'SS Class:
major
3'SS Sequence:
GTGTCCTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACGCAT
U12 Branch Point Sequence:
GTGTCCTCTACA
Flanking Amino Acid:
PAALDGKMETGDVIVSVNDT
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
73.2
33.8
Major BPS
62.2
0.3
1.3
71.6
36.4
Major PPT
76.4
0.59
0.9
69.2
37
Minor 5ss
38.5
-1.3
3
49.6
46.6
Minor BPS
56.6
0.2
1.9
68.69
43.1

Associated Gene:

Gene:
MAGI1
Ensembl Gene ID:
ENSAPLG00000015151
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025942
16784897 - 17103079
318183
ENSAPLT00000020095
16784897 - 17103079
318183
ENSAPLT00000047968
16784897 - 17103079
318183
ENSAPLT00000015821
16825669 - 17102662
276994
ENSAPLT00000041725
16784897 - 17103079
318183
ENSAPLT00000027158
16784897 - 17103079
318183