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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17066402_17072700_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17066402 - 17072700
Intron Length:
6299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCCT
U12 Branch Point Sequence:
TCTCTCTTTCCT
Flanking Amino Acid:
LPVPKKSPKSQPLERKDSQN
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
75.7
40.1
Major BPS
34.7
-0.9
4.2
75
39.9
Major PPT
85.5
0.8
0.7
77.2
31.5
Minor 5ss
42.5
-0.8
2.9
60.1
44
Minor BPS
42.3
-0.5
3.6
72.84
44

Associated Gene:

Gene:
MAGI1
Ensembl Gene ID:
ENSAPLG00000015151
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020095
16784897 - 17103079
318183
ENSAPLT00000047968
16784897 - 17103079
318183
ENSAPLT00000015821
16825669 - 17102662
276994
ENSAPLT00000041725
16784897 - 17103079
318183
ENSAPLT00000027158
16784897 - 17103079
318183
ENSAPLT00000025942
16784897 - 17103079
318183