About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17072918_17078785_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17072918 - 17078785
Intron Length:
5868

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
ATTAATGTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
CTTTGCAAAACT
Flanking Amino Acid:
AQSRSMYESRPMSPSPATGL
Intron Amino Acid Position:
786

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1.2
77.8
38.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
73.3
0.53
1
65.3
44.6
Minor 5ss
35.3
-1.7
2.8
41.7
38.2
Minor BPS
48.8
-0
2.3
76.44
46

Associated Gene:

Gene:
MAGI1
Ensembl Gene ID:
ENSAPLG00000015151
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047968
16784897 - 17103079
318183
ENSAPLT00000041725
16784897 - 17103079
318183
ENSAPLT00000025942
16784897 - 17103079
318183
ENSAPLT00000020095
16784897 - 17103079
318183