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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17078864_17081538_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17078864 - 17081538
Intron Length:
2675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGACTG
5'SS Class:
major
3'SS Sequence:
TCTTTCCCTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTGATTAAAA
Flanking Amino Acid:
REINSTSFGEFPDYQEQDIF
Intron Amino Acid Position:
812

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
68.4
42.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
87.7
0.85
0.6
85.5
21.9
Minor 5ss
38
-1.4
3.3
53.1
43.7
Minor BPS
58.9
0.27
2.1
78.09
38.1

Associated Gene:

Gene:
MAGI1
Ensembl Gene ID:
ENSAPLG00000015151
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047968
16784897 - 17103079
318183
ENSAPLT00000041725
16784897 - 17103079
318183
ENSAPLT00000025942
16784897 - 17103079
318183
ENSAPLT00000020095
16784897 - 17103079
318183