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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17082785_17086056_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17082785 - 17086056
Intron Length:
3272

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCTGC
5'SS Class:
major
3'SS Sequence:
TTTCCTTCCCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
CTTGCTCAGACA
Flanking Amino Acid:
LTVRRKVVYTVPKAENEVPS
Intron Amino Acid Position:
825

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.1
64.1
43.4
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
84
0.76
0.7
77
31.7
Minor 5ss
42.8
-0.8
3.2
58.8
46.1
Minor BPS
44.5
-0.4
2
58.23
42

Associated Gene:

Gene:
MAGI1
Ensembl Gene ID:
ENSAPLG00000015151
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020095
16784897 - 17103079
318183
ENSAPLT00000047968
16784897 - 17103079
318183
ENSAPLT00000015821
16825669 - 17102662
276994
ENSAPLT00000041725
16784897 - 17103079
318183
ENSAPLT00000027158
16784897 - 17103079
318183
ENSAPLT00000025942
16784897 - 17103079
318183