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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17086351_17089680_F

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
17086351 - 17089680
Intron Length:
3330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CCTCACAAAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACAAAA
U12 Branch Point Sequence:
CCTCACAAAATA
Flanking Amino Acid:
VSRPEAGTTFGRIIEGSPAD
Intron Amino Acid Position:
923

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
82.1
37.7
Major BPS
60.3
0.26
1
65.5
28
Major PPT
53.7
0.08
1
48.2
32.7
Minor 5ss
40.6
-1
3.1
60.2
44.1
Minor BPS
41.9
-0.6
2
50.3
41.1

Associated Gene:

Gene:
MAGI1
Ensembl Gene ID:
ENSAPLG00000015151
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015821
16825669 - 17102662
276994