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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17086351_17095467_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17086351 - 17095467
Intron Length:
9117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
ATTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
ATAAAATAAATT
Flanking Amino Acid:
VSRPEAGTTFESSNATLLTN
Intron Amino Acid Position:
1005

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
82.1
37.7
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
86.6
0.82
0.8
81.1
35.9
Minor 5ss
40.6
-1
3.1
60.2
44.1
Minor BPS
44.4
-0.3
2
62.57
41

Associated Gene:

Gene:
MAGI1
Ensembl Gene ID:
ENSAPLG00000015151
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020095
16784897 - 17103079
318183