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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17089849_17095467_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17089849 - 17095467
Intron Length:
5619

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
ATTTGTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCATAAT
U12 Branch Point Sequence:
ATAAAATAAATT
Flanking Amino Acid:
TVTLRIIPGDESSNATLLTN
Intron Amino Acid Position:
979

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
70.7
35.4
Major BPS
75.2
0.63
1.1
74.5
36.6
Major PPT
86.6
0.82
0.8
81.1
35.9
Minor 5ss
37.9
-1.4
3.5
51.8
47.3
Minor BPS
44.4
-0.3
2
62.57
41

Associated Gene:

Gene:
MAGI1
Ensembl Gene ID:
ENSAPLG00000015151
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041725
16784897 - 17103079
318183
ENSAPLT00000027158
16784897 - 17103079
318183
ENSAPLT00000025942
16784897 - 17103079
318183
ENSAPLT00000015821
16825669 - 17102662
276994
ENSAPLT00000047968
16784897 - 17103079
318183