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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17098107_17101729_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17098107 - 17101729
Intron Length:
3623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTCAA
5'SS Class:
major
3'SS Sequence:
TATTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTTAT
U12 Branch Point Sequence:
TTTGCTGTTATT
Flanking Amino Acid:
KRGDGSVPEYDPSSDRNSPA
Intron Amino Acid Position:
1126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.54
1
62.9
39
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
90.9
0.92
0.7
89.2
27.2
Minor 5ss
26.8
-2.7
3
27.9
38.8
Minor BPS
47.8
-0
2.3
74.98
42.6

Associated Gene:

Gene:
MAGI1
Ensembl Gene ID:
ENSAPLG00000015151
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025942
16784897 - 17103079
318183
ENSAPLT00000020095
16784897 - 17103079
318183
ENSAPLT00000047968
16784897 - 17103079
318183
ENSAPLT00000015821
16825669 - 17102662
276994
ENSAPLT00000041725
16784897 - 17103079
318183
ENSAPLT00000027158
16784897 - 17103079
318183