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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17149734_17149836_F

Intron Information:

Intron Rank:
142620
Intron Class:
major
Intron Phase:
Intron Coordinates:
17149734 - 17149836
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
ATATTGTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TGGTTATTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
58.8
40.6
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
78.9
0.65
1
69.9
45.1
Minor 5ss
28.5
-2.5
3.5
35
43.4
Minor BPS
47.7
-0
1.9
66.89
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026858
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042712
17149674 - 17158013
8340