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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17149734_17154939_F

Intron Information:

Intron Rank:
142616
Intron Class:
major
Intron Phase:
Intron Coordinates:
17149734 - 17154939
Intron Length:
5206

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
TCATTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATTATATTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
58.8
40.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
85.5
0.8
0.8
80.1
31.8
Minor 5ss
28.5
-2.5
3.5
35
43.4
Minor BPS
65.1
0.47
1.6
75.74
34.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026858
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029659
17149674 - 17158013
8340