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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17149932_17155187_F

Intron Information:

Intron Rank:
142621
Intron Class:
major
Intron Phase:
Intron Coordinates:
17149932 - 17155187
Intron Length:
5256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATATATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
78
32.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
92.5
0.96
0.6
85.6
29.1
Minor 5ss
42.9
-0.8
3
63.8
41.6
Minor BPS
54.1
0.21
1.7
72.08
39.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026858
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042712
17149674 - 17158013
8340