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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17155304_17157874_F

Intron Information:

Intron Rank:
142618
Intron Class:
major
Intron Phase:
Intron Coordinates:
17155304 - 17157874
Intron Length:
2571

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCAAGTTCC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCATTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CTTTCTGTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98.1
1.14
0.7
85.2
29.9
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
74.7
0.56
0.8
67
38.8
Minor 5ss
31.1
-2.2
3.8
44.6
43.4
Minor BPS
60.7
0.32
2
73.34
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026858
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029659
17149674 - 17158013
8340
ENSAPLT00000042712
17149674 - 17158013
8340