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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17201951_17213100_F

Intron Information:

Intron Rank:
125165
Intron Class:
major
Intron Phase:
Intron Coordinates:
17201951 - 17213100
Intron Length:
11150

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAAGTAT
5'SS Class:
major
3'SS Sequence:
TGCTTCTGTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TAGTAAATAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
70.7
35.4
Major BPS
79.4
0.73
1
80.1
32
Major PPT
77.3
0.61
0.9
72
38.1
Minor 5ss
37.9
-1.4
3.5
51.8
47.3
Minor BPS
49.2
0.02
2
73
42.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017409
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019991
17201755 - 17214671
12917