About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17213158_17214248_F

Intron Information:

Intron Rank:
125166
Intron Class:
major
Intron Phase:
Intron Coordinates:
17213158 - 17214248
Intron Length:
1091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAACAT
U12 Branch Point Sequence:
CTGCACTGAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.7
33.7
Major BPS
55.8
0.15
1.3
63.4
42.8
Major PPT
91.1
0.93
0.7
89.2
26.8
Minor 5ss
32.8
-2
2.9
39.4
46.1
Minor BPS
52.4
0.07
1.7
62.99
42.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017409
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019991
17201755 - 17214671
12917