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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17218607_17222898_F

Intron Information:

Intron Rank:
140745
Intron Class:
major
Intron Phase:
Intron Coordinates:
17218607 - 17222898
Intron Length:
4292

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTATCTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
CTTCTGTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
78.1
36.6
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
78.9
0.65
0.9
77.6
36.5
Minor 5ss
36.4
-1.5
3.3
49.3
46.9
Minor BPS
48.4
-0
2.3
72.48
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025774
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017671
17218518 - 17229693
11176