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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17223038_17227525_F

Intron Information:

Intron Rank:
140746
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
17223038 - 17227525
Intron Length:
4488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCTAC
5'SS Class:
major
3'SS Sequence:
CGCATAAACACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTCGCATAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
67.2
34.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
55.1
0.11
1
47
38.4
Minor 5ss
38.8
-1.3
3
46.6
43.5
Minor BPS
49.7
-0
2.1
70.52
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025774
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017671
17218518 - 17229693
11176