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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17226539_17227539_F

Intron Information:

Intron Rank:
140749
Intron Class:
major
Intron Phase:
Intron Coordinates:
17226539 - 17227539
Intron Length:
1001

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAATTG
5'SS Class:
major
3'SS Sequence:
GTGTTATTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCGCAT
U12 Branch Point Sequence:
TTTCGCATAAAC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.5
0.58
1
67.6
38.4
Major BPS
70
0.5
1.4
79.6
35.6
Major PPT
70
0.45
1.1
65.3
44.7
Minor 5ss
41
-1
3.2
52.7
45.5
Minor BPS
49.7
-0
2.1
70.52
40.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025774
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023668
17223019 - 17228929
5911