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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_1728213_1728330_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
1728213 - 1728330
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
AACATTTAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGTTTTTAAACA
Flanking Amino Acid:
LVLVITALVRGVGQNLQDHL
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
1
85.3
27
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
61.7
0.26
1.1
59.9
44.2
Minor 5ss
40.1
-1.1
2.7
50.2
46
Minor BPS
65.1
0.47
1.6
75.16
36.6

Associated Gene:

Gene:
CHDH
Ensembl Gene ID:
ENSAPLG00000013484
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029655
1727271 - 1731439
4169