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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17284333_17308054_F

Intron Information:

Intron Rank:
129464
Intron Class:
major
Intron Phase:
Intron Coordinates:
17284333 - 17308054
Intron Length:
23722

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAGGGGAG
5'SS Class:
strong_major
3'SS Sequence:
GTGTGTTATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAC
U12 Branch Point Sequence:
TGTTACTGACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
68.1
40.5
Major BPS
73.6
0.59
0.9
63.3
35.6
Major PPT
71.8
0.49
1.1
65.3
44.8
Minor 5ss
16.8
-3.8
4.1
27.2
44.5
Minor BPS
53
0.09
1.9
70.45
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019640
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019620
17283862 - 17308915
25054