Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17300311_17308054_F

Intron Information:

Intron Rank:

129465

Intron Class:

major

Intron Phase:

Intron Coordinates:

17300311 - 17308054

Intron Length:

7744

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATGGT

5'SS Class:

strong_major

3'SS Sequence:

GTGTGTTATACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAC

U12 Branch Point Sequence:

TGTTACTGACCA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.3

0.86

0.9

78.6

35.9

Major BPS

73.6

0.59

0.9

63.3

35.6

Major PPT

71.8

0.49

1.1

65.3

44.8

Minor 5ss

33.8

-1.8

3.4

49.7

46.6

Minor BPS

0.09

1.9

70.45

41.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019640

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044440

17300147 - 17308230

8084