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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17320852_17326249_F

Intron Information:

Intron Rank:
143440
Intron Class:
major
Intron Phase:
Intron Coordinates:
17320852 - 17326249
Intron Length:
5398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTGGATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTCTCCTGGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.1
37.5
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
72.7
0.51
1
65.4
39.9
Minor 5ss
25.6
-2.8
3.1
31.9
42.9
Minor BPS
69.7
0.7
1.4
83.75
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027274
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031999
17315055 - 17328028
12974
ENSAPLT00000044486
17315055 - 17327433
12379
ENSAPLT00000033274
17315055 - 17328028
12974