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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_173222_174179_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
173222 - 174179
Intron Length:
958

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGTTTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GTATCATTAATA
Flanking Amino Acid:
NYHPFFFRTRTCELLLQPEN
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
75.3
0.57
0.9
69.5
41.6
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
68.3
0.57
1.6
74.68
36.3

Associated Gene:

Gene:
IL17RD
Ensembl Gene ID:
ENSAPLG00000002958
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003029
136259 - 183602
47344