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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17326966_17327356_F

Intron Information:

Intron Rank:
143452
Intron Class:
major
Intron Phase:
Intron Coordinates:
17326966 - 17327356
Intron Length:
391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAAGG
5'SS Class:
major
3'SS Sequence:
TTCTATTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
TTTAGGATAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
0.9
64.2
41.6
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
85.8
0.81
0.7
80.9
30.8
Minor 5ss
27.6
-2.6
2.7
28.4
37.1
Minor BPS
44.8
-0.3
2.6
73.41
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027274
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044486
17315055 - 17327433
12379