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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17331390_17343429_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17331390 - 17343429
Intron Length:
12040

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTCGTT
5'SS Class:
major
3'SS Sequence:
TTTTTAATTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGCTTTTTAATT
Flanking Amino Acid:
SRDRRTCDTPDHEHSHKKNK
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
69.2
41.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83.5
0.75
0.8
79.2
32.9
Minor 5ss
41.3
-1
3.7
64.7
46.6
Minor BPS
72.1
0.77
1.1
79.54
37.3

Associated Gene:

Gene:
ADAMTS9
Ensembl Gene ID:
ENSAPLG00000005973
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006283
17329198 - 17404071
74874