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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17343717_17344620_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17343717 - 17344620
Intron Length:
904

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
CTTCTTAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTCTTCTTAAAA
Flanking Amino Acid:
QHYVLTLMSIVASIYKDPSI
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1
73.3
37.3
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
70.6
0.46
1
66.9
37.1
Minor 5ss
35.8
-1.6
2.9
44.1
38.5
Minor BPS
75.3
0.79
1.3
80.08
35.8

Associated Gene:

Gene:
ADAMTS9
Ensembl Gene ID:
ENSAPLG00000005973
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006283
17329198 - 17404071
74874