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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17344929_17345298_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17344929 - 17345298
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTGG
5'SS Class:
major
3'SS Sequence:
GCTCTGCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
TGAAAACTAACA
Flanking Amino Acid:
LQHDTAVLVTRQDICRAHDK
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
63
43.8
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
77.1
0.61
0.9
72.8
37.5
Minor 5ss
42.2
-0.9
3.1
55.4
48.8
Minor BPS
44.2
-0.4
2
57.77
40.2

Associated Gene:

Gene:
ADAMTS9
Ensembl Gene ID:
ENSAPLG00000005973
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006283
17329198 - 17404071
74874