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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17345570_17347214_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
17345570 - 17347214
Intron Length:
1645

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTATGTTTT
5'SS Class:
weak_major
3'SS Sequence:
GTGTTTCTCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
ATTTATCCAACT
Flanking Amino Acid:
AFTIAHELGHVFNMPHDDNH
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
73.5
38
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
75.2
0.57
0.9
73.8
36.9
Minor 5ss
64.8
0.5
2.2
76.1
39.5
Minor BPS
49.7
0.05
2
76.77
39.3

Associated Gene:

Gene:
ADAMTS9
Ensembl Gene ID:
ENSAPLG00000005973
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006283
17329198 - 17404071
74874