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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17348370_17348644_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
17348370 - 17348644
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCAATAACTTAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTCAATAACT
Flanking Amino Acid:
GPGSQVCPYMQMQCRRLWCI
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
57
0.16
1.1
58.5
41
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
71.9
0.77
1.9
94.76
31.4

Associated Gene:

Gene:
ADAMTS9
Ensembl Gene ID:
ENSAPLG00000005973
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006283
17329198 - 17404071
74874