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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17361738_17361846_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17361738 - 17361846
Intron Length:
109

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGTAT
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTTAT
U12 Branch Point Sequence:
TCTGCTTTATCC
Flanking Amino Acid:
DRIEQEITLQVLSVGNLYNP
Intron Amino Acid Position:
683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
0.9
74.1
32
Major BPS
66.1
0.4
1.3
59.6
46.8
Major PPT
90.1
0.9
0.6
89
20
Minor 5ss
32.3
-2
3.4
45.9
49.3
Minor BPS
60.3
0.3
1.7
69.42
42.8

Associated Gene:

Gene:
ADAMTS9
Ensembl Gene ID:
ENSAPLG00000005973
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006283
17329198 - 17404071
74874