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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17362659_17364239_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
17362659 - 17364239
Intron Length:
1581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCACTCT
5'SS Class:
major
3'SS Sequence:
TTCCCTGGCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
CTTTCCCTGGCT
Flanking Amino Acid:
TEPCGTECELRWHIARRSEC
Intron Amino Acid Position:
768

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.1
0.4
1.1
61.9
39.3
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
69.7
0.44
1
68.2
37.4
Minor 5ss
39.3
-1.2
3.3
56.7
47.5
Minor BPS
44.6
-0.3
3.6
79.95
42.3

Associated Gene:

Gene:
ADAMTS9
Ensembl Gene ID:
ENSAPLG00000005973
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006283
17329198 - 17404071
74874