About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17364451_17365080_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17364451 - 17365080
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
CTCCTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAG
U12 Branch Point Sequence:
GCTTGCTTAGTG
Flanking Amino Acid:
GGWRYSAWTECSKSCGGGTR
Intron Amino Acid Position:
839

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
67
44.2
Major BPS
52.3
0.06
1.6
51.4
46
Major PPT
84.9
0.78
0.7
79.7
25.7
Minor 5ss
31.1
-2.2
3.2
39.3
46.1
Minor BPS
48.8
-0.2
2.1
55.65
46

Associated Gene:

Gene:
ADAMTS9
Ensembl Gene ID:
ENSAPLG00000005973
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006283
17329198 - 17404071
74874