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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17366545_17367354_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17366545 - 17367354
Intron Length:
810

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTCCA
5'SS Class:
major
3'SS Sequence:
TGCCCTCTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAG
U12 Branch Point Sequence:
CTACTCAGACCC
Flanking Amino Acid:
AAWQVGPWGQCTVTCGQGYQ
Intron Amino Acid Position:
949

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.2
62.7
43.7
Major BPS
63.2
0.33
1.5
71.6
36.4
Major PPT
73.6
0.53
0.8
64.9
36.3
Minor 5ss
39
-1.2
3
51.6
44.8
Minor BPS
41.5
-0.6
1.8
50.21
39.9

Associated Gene:

Gene:
ADAMTS9
Ensembl Gene ID:
ENSAPLG00000005973
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006283
17329198 - 17404071
74874