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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17367475_17368243_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17367475 - 17368243
Intron Length:
769

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATCCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCCCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTCCAT
U12 Branch Point Sequence:
TTTCCCTTACAG
Flanking Amino Acid:
NAATRPTDTQDCEIAACPPH
Intron Amino Acid Position:
989

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
77.8
36.9
Major BPS
64.7
0.37
1.3
74.7
40
Major PPT
83.8
0.76
0.8
76.9
31.9
Minor 5ss
36.2
-1.6
3.1
51.2
45.2
Minor BPS
61.4
0.22
1.8
70.4
42.3

Associated Gene:

Gene:
ADAMTS9
Ensembl Gene ID:
ENSAPLG00000005973
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006283
17329198 - 17404071
74874