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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17382995_17387910_F

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17382995 - 17387910
Intron Length:
4916

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTCCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CACCTCTCATCC
Flanking Amino Acid:
PKWKSGDWGQCSVSCGRGVQ
Intron Amino Acid Position:
1344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.8
0.87
0.8
76.8
33.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
81.1
0.7
0.7
72.9
32
Minor 5ss
28.2
-2.5
3.1
38.3
46.6
Minor BPS
44.5
-0.4
1.8
48.62
41.3

Associated Gene:

Gene:
ADAMTS9
Ensembl Gene ID:
ENSAPLG00000005973
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006283
17329198 - 17404071
74874