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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17392984_17394247_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17392984 - 17394247
Intron Length:
1264

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GAAGCACTGACA
Flanking Amino Acid:
YVWITGEWSECSVTCGKGYK
Intron Amino Acid Position:
1459

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
73.6
0.53
0.8
64.5
36.5
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
43.4
-0.5
1.9
51.19
39.5

Associated Gene:

Gene:
ADAMTS9
Ensembl Gene ID:
ENSAPLG00000005973
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006283
17329198 - 17404071
74874