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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17394443_17396279_F

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17394443 - 17396279
Intron Length:
1837

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTAAGTTTA
5'SS Class:
major
3'SS Sequence:
TCTGGTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
TTGAGATAAAAT
Flanking Amino Acid:
ASWRVGNWGSCSVTCGVGVM
Intron Amino Acid Position:
1524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.3
75
38.1
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
79.6
0.67
0.9
72.9
37.4
Minor 5ss
44.7
-0.6
2.8
53.7
43.8
Minor BPS
42
-0.5
2.3
63.06
46.4

Associated Gene:

Gene:
ADAMTS9
Ensembl Gene ID:
ENSAPLG00000005973
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006283
17329198 - 17404071
74874