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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17396737_17396893_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17396737 - 17396893
Intron Length:
157

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TGATGCCTGACA
Flanking Amino Acid:
FLKVKGKTLKVYCSGMQTDS
Intron Amino Acid Position:
1600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.8
0.9
78.5
32
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
90
0.9
0.6
88.4
21.2
Minor 5ss
38.2
-1.3
3.1
52.1
45.1
Minor BPS
48.9
-0
2.1
65.03
40.9

Associated Gene:

Gene:
ADAMTS9
Ensembl Gene ID:
ENSAPLG00000005973
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006283
17329198 - 17404071
74874