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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17397218_17398399_F

Intron Information:

Intron Rank:
36
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
17397218 - 17398399
Intron Length:
1182

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTCTTCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TATTCACCAACT
Flanking Amino Acid:
RLDLNTMQIITTDLHFARTH
Intron Amino Acid Position:
1676

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
80.8
0.69
0.7
75.7
26.5
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
52.5
0.16
2.1
80.29
40.6

Associated Gene:

Gene:
ADAMTS9
Ensembl Gene ID:
ENSAPLG00000005973
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006283
17329198 - 17404071
74874