About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17400017_17401721_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17400017 - 17401721
Intron Length:
1705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TTTTTGCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
AAGCCCTTACAT
Flanking Amino Acid:
YAVSEIQKSPDGTKVVGKCG
Intron Amino Acid Position:
1742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
67.3
39.4
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
87
0.83
0.8
81.7
30.4
Minor 5ss
42.7
-0.8
2.8
58.3
40.4
Minor BPS
52
0.14
1.8
66.71
43.3

Associated Gene:

Gene:
ADAMTS9
Ensembl Gene ID:
ENSAPLG00000005973
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006283
17329198 - 17404071
74874