About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_174225_174313_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
174225 - 174313
Intron Length:
89

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TCTCCTCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TCTCCTCTGACA
Flanking Amino Acid:
LQPENLVCKPYWKPRNLSVT
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.3
0.64
1
75
30.4
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
75.8
0.58
0.9
72
32.7
Minor 5ss
42.1
-0.9
2.8
55
43.6
Minor BPS
56.1
0.18
1.7
68.58
37.7

Associated Gene:

Gene:
IL17RD
Ensembl Gene ID:
ENSAPLG00000002958
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003029
136259 - 183602
47344