About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_174466_175303_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
174466 - 175303
Intron Length:
838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATCGC
5'SS Class:
major
3'SS Sequence:
TTCTTTAATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
CTTTCTTTAATG
Flanking Amino Acid:
GPFKQKTCKQEQNTDTTSCI
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
60.6
44.4
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
77.9
0.63
0.9
74.8
33.8
Minor 5ss
32.8
-2
3.2
44.8
43
Minor BPS
76.8
0.7
1.3
74.65
38.4

Associated Gene:

Gene:
IL17RD
Ensembl Gene ID:
ENSAPLG00000002958
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003029
136259 - 183602
47344