Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17494529_17496074_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

17494529 - 17496074

Intron Length:

1546

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCGGC

5'SS Class:

strong_major

3'SS Sequence:

TCCTGTTTTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCGGAG

U12 Branch Point Sequence:

CGGCTCGGAGCA

Flanking Amino Acid:

LHQLPPHDNEVRYCNSLDEE

Intron Amino Acid Position:

141

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.2

0.78

0.9

66.6

39.6

Major BPS

42.1

-0.4

1.6

40.4

42.3

Major PPT

79.8

0.67

0.8

72.5

37.7

Minor 5ss

31.2

-2.1

3.3

41.1

45.6

Minor BPS

37.1

-0.9

41.79

39.1

Associated Gene:

Gene:

PRICKLE2

Ensembl Gene ID:

ENSAPLG00000003962

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039430

17483652 - 17511629

27978

ENSAPLT00000004072

17482757 - 17511629

28873