About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_13_17496213_17496536_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
17496213 - 17496536
Intron Length:
324

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GCTTTCTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
GCTTTCTCAACA
Flanking Amino Acid:
VTMTGAICEQCGGQINGGDM
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
72.2
39.5
Major BPS
79.4
0.73
1
80.1
32
Major PPT
74.7
0.56
0.9
69.9
35.4
Minor 5ss
29.2
-2.4
2.9
36.2
40.8
Minor BPS
66
0.5
1.5
72
40

Associated Gene:

Gene:
PRICKLE2
Ensembl Gene ID:
ENSAPLG00000003962
Chromosome:
13

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039430
17483652 - 17511629
27978
ENSAPLT00000004072
17482757 - 17511629
28873